摘要:本文将带你了解Illustrator教程之蛋白质结构域示意图绘制软件 —— DOG 1.0,希望本文对大家学Illustrator有所帮助
本文将带你了解Illustrator教程之蛋白质结构域示意图绘制软件 —— DOG 1.0,希望本文对大家学Illustrator有所帮助
DOG 1.0: Illustrator of Protein Domain Structures.
Jian Ren
, Longping
Wen, Xinjiao Gao, Changjiang Jin, Yu Xue
and Xuebiao Yao. Cell Research
(2009)
19:271–273.
Abstract
| Full Text
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| Supplementary information
Schematic
diagram of protein domain structures with functional
motifs/sites is an important part in a large proportion
of scientific articles which are focused on molecular
and cellular researches. In order to estimate
how many papers will contain protein domain graphs,
we simply chose five typical molecular and cellular
magazines, including Cell
,
Nature
Cell Biology
(NCB)
, The
Journal of Cell Biology
(JCB)
, Molecular
Biology of the Cell
(MBC)
and Molecular
and Cellular Biology
(MCB)
. Then we carefully read all research
articles of the five journals published in 2007,
while the reviews and other types of articles
were not taken into account. Totally, there were
551 of 1994 articles (27.6%
)
to contain at least one figure for protein domain
structures. Thus, diagram of protein domain/motif
structures in an attractive, concise and precise
manner is greatly helpful for a broad readership
to grasp the old and novel functions of proteins
rapidly.
In this
work, we present a novel software of DOG
(Domain Graph
,
version 1.0) for experimentalists, to prepare
publication-quality figures of protein domain
structures. The scale of a protein domain and
the position of a functional motif/site will be
precisely calculated. The DOG 1.0 was written
in JAVA 1.5
(J2SE 5.0) and packed with Install4j 4.0.8. Thus,
the DOG 1.0 could be easily installed on a computer.
Then we developed several packages to support
three major Operating Systems (OS), including
Windows, Unix/Linux and Mac. The Windows XP, Fedora
Core 6 OS (Linux), Apple Mac OS X 10.4 (Tiger)
and 10.5 (Leopard) were chosen to test the stability
of DOG1.0 software. For Windows and Linux systems,
a Java Runtime Environment 6 (JRE) package of
Sun Microsystems was also included. The DOG 1.0
software is freely available from: //dog.biocuckoo.org
.
DOG 1.0 User Interface
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